After being dismissed for 97 on the first day, the West Indies slumped to 51-4 as it began its second innings 225 runs behind South Africa.
Bonner, who has played four Test matches and scored a century and two half-centuries in his career, will play no further part in the ongoing Test which is a big blow for the host side.
Ngidi claimed his second five-wicket bag in tests and his first since his debut against India in 2018 as South Africa ended the West Indies’ first innings in just 40.5 overs after the home side had chosen to bat on winning the toss.
Batting first, the tourists conceded a hefty 319 for nine at the Harare Sports Club, but they then delivered an authoritative response by charging to the target with 43 balls to spare.
CSA said that "discussions with AB de Villiers have concluded with the batsman deciding once and for all, that his retirement will remain final."
A COVID-19 outbreak left the star-sprinkled IPL on tenterhooks as Kolkata Knight Riders' Varun Chakravarthy and Sandeep Warrier tested positive for the dreaded virus, forcing postponement of their game against Royal
It would have meant that South Africa would not have been able to compete in international cricket while its national federation was stripped of its status.
The three skippers Dean Elgar, Temba Bavuma and Dane van Niekerk have signed a joint statement expressing their concerns before the ICC statement came as a relief.
Babar marked the day he unseated Virat Kohli to become the top-ranked ODI batsman in the world with another brilliant limited-overs innings, albeit in the shortest format this time.
According to an ICC media release, match referee Andy Pycroft imposed the sanction after Heinrich Klaasen's side was ruled to be one over short of the target after time allowances were taken into consideration.
Pakistan opener Fakhar's score came from 155 balls and he hit 18 fours and 10 sixes to give South Africa a big scare in the second one-day international.
All-rounder Wihan Lubbe and fast bowler Lizaad Williams have received maiden call-ups to the Proteas side.
The matches are scheduled to be played from July 11-25 and will comprise three ODIs, that will form part of the ICC's Cricket World Cup Super League programme, and three T20 Internationals
The 32-year-old legspinner Zahid Mahmood picked up 3-40 in his debut game and had reduced South Africa to 65-7 before Miller's clean hitting powered South Africa to a total of 164-8
The all-rounder claimed five for 17 in four overs as the tourists restricted the hosts to just 144 for seven wickets after winning the toss and bowling.
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The three ODIs will be part of the ICC Super League, a pathway to ensuring direct qualification for the 2023 World Cup scheduled to be held in India.
Mohammad Rizwan enjoyed a brilliant outing for Pakistan in the first T20I against South Africa.
Rizwan became only the second Pakistani to score a hundred in all three formats.
Find full details on when and where to watch PAK vs SA 1st T20I Live: When and where to watch PAK vs SA 1st T20I?
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