Captain Harmanpreet Kaur, whose indifferent form has hurt the team, said she was disappointed at the result and the 0-3 series defeat.
Kalpana, who made her ODI debut at home against New Zealand in 2015, will be the second wicketkeeper in the squad apart from Taniya Bhatia.
The Indian board also announced the President's XI squad that will play a warm-up game ahead of the series on February 18.
In both games whether chasing or batting first, India were stuck in the less than 140-run mark, which is below-par against a top team like New Zealand.
Chasing a modest target, New Zealand made heavy weather of the chase before scampering home off the last ball of the match losing six wickets.
New Zealand pacer Lea Tahuhu played a decisive role with three scalps off her four overs to derail India's pursuit of a 160-run target .
Smriti Mandhana's fiery knock (34-ball 58) on Wednesday, however, couldn't power India women home as they lost the first T20I against New Zealand women by 23 runs.
The 33-year-old reached the milestone when she walked into the field for the ongoing third and final T20I against West Indies in Karachi.
Smriti cracked her fourth ODI century and an unbeaten 90 in India's 2-1 win in the three-match rubber against New Zealand.
Mithali made her ODI debut against England in Milton Keynes in January 1999 and on Friday became the first woman to compete in 200 matches in the 50-over format.
A solid knock was expected from Mithali on her 200th ODI but she ended up with nine off 28 balls.
Interestingly, Indian women have played a total of 263 ODIs in their history and Mithali has been a part of 200 of them.
In the second ODI against New Zealand, Mithali scored an unbeaten 63 off 111 balls as India chased down 162 in 35.2 overs.
The spin trio of Ekta Bisht, Poonam Yadav and Deepti Sharma, who had tormented New Zealand in India's nine-wicket win in the first ODI, took two wickets each to stifle the Kiwi innings yet again.
The Indian women's team was at the centre of a huge controversy after its semi-final exit in the T20 World Cup in the West Indies.
The ODIs are set to play in Mumbai on February 22. 25 and 28, while the T20Is will be held in Guwahati, begin March 9.
Mandhana played a crucial role in India's semi-final appearance at the ICC Women's World T20 in the West Indies.
The New Zealand tour will be the team's first assignment after its controversial exit from the World T20 last month when it lost to England in the semi-finals.
From his cricketing days, Raman is best remembered for being the first Indian to score a century in South Africa during the 1992-93 tour.
However, a cloud of uncertainty remains over Kirsten's appointment as the South African is not keen on giving up his plum job with Indian Premier League franchise Royal Challengers Bangalore.
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