The Congress sought his arrest and asked the panel to ban him from campaigning for "creating animosity between communities" in western Uttar Pradesh.
The party also demanded "stern action" against the BJP and Modi, including derecognition of the party, for the alleged violation of the model code of conduct.
"BJP, Modi and Amit Shah are trying to replicate the politics of hatred and communal divide like what was done in 2002 in Gujarat," Congress spokesman Randeep Surjewala told reporters.
"We will make a demand to the state government and election commission that a criminal case is lodged against Amit Shah and Muzaffarnagar riots accused (legislator) Suresh Rana and they should be prevented from campaigning in any part of the country. There should be a complete ban (on them)."
The party said Amit Shah committed an offence under section 125 of the Representation of Peoples Act, 1951, which calls for the immediate registration of an FIR and his arrest.
