In a fax letter sent to the BJP president's office, the DM urged him not to pay a visit to the area as it could disturb calm and peace that is prevailing in the area after a string of violent clashes and incidents since Sep 7.
Rajnath Singh accused the Akhilesh Yadav government of arresting innocent people in order to veil their involvement in the act of violence.
"The sting operation by a television channel clearly proves that the people who are present inside the government have a hand in the riots, so why are they only arresting the BJP legislators?" he asked.
Rajnath Singh said the situation in Muzaffarnagar is like during the period of emergency, and said BJP leaders will meet President Pranab Mukherjee Sep 24.
He also said BJP legislators were not in any way involved in inciting violence when communal riots broke out in Muzaffarnagar Sep 7, leaving 48 dead and over 40,000 homeless.
Ramesh said there was hope when Akhilesh Yadav took over as the state chief minister but all those hopes have now been dashed.
"Akhilesh is a friend but I have to say that the riots are a big blot on his government and on his very own administrative acumen," he said.